Transcriptomes
Roots, Leaves, Floral buds:
Raw and assembled reads available via NCBI as part of BioProject PRJNA508901 (link). Contact: Mary Gehring, Whitehead Institute Seed Tissues: - Raw reads avaliable on NCBI, BioProject PRJNA718528 (link). Friedman Lab, Harvard University and Arnold Arboretum. Contact: William (Ned) Friedman |
GenomeAnnotated genome assembly available via NCBI: BioProject PRJNA508901 (link).
Associated publication: (Please cite this publication if you use data from BioProject PRJNA508901) Water lily (Nymphaea thermarum) genome reveals variable genomic signatures of ancient vascular cambium losses Rebecca A. Povilus, Jeffrey M. DaCosta, Christopher Grassa, Prasad R. V. Satyaki, Morgan Moeglein, Johan Jaenisch, Zhenxiang Xi, Sarah Mathews, Mary Gehring, Charles C. Davis, William E. Friedman Proceedings of the National Academy of Sciences Mar 2020, 201922873; DOI: 10.1073/pnas.1922873117 |
Other Resources:
Genome of the water lily Nymphaea colorata:
NCBI BioProject PRJNA587754: https://www.ncbi.nlm.nih.gov/bioproject/587754
Associated Publication: The water lily genome and the early evolution of flowering plants. Zhang L, et al. Nature 2020 Jan
Phytozome:
Project site: https://phytozome.jgi.doe.gov/pz/portal.html
1000 (1KP) Initiative:
Project site: https://sites.google.com/a/ualberta.ca/onekp/
Blast Portal: https://www.bioinfodata.org/Blast4OneKP/blast
Ancestral Angiosperm Genome Project (AAPG):
Project site: http://ancangio.uga.edu/
Blast Portal: http://jlmwiki.plantbio.uga.edu/aagp/blast/
NCBI BioProject PRJNA587754: https://www.ncbi.nlm.nih.gov/bioproject/587754
Associated Publication: The water lily genome and the early evolution of flowering plants. Zhang L, et al. Nature 2020 Jan
Phytozome:
Project site: https://phytozome.jgi.doe.gov/pz/portal.html
1000 (1KP) Initiative:
Project site: https://sites.google.com/a/ualberta.ca/onekp/
Blast Portal: https://www.bioinfodata.org/Blast4OneKP/blast
Ancestral Angiosperm Genome Project (AAPG):
Project site: http://ancangio.uga.edu/
Blast Portal: http://jlmwiki.plantbio.uga.edu/aagp/blast/